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Data Analysis and Workflows
- CyVerse (originally the iPlant Collaborative) provides cyberinfrastructure to handle huge datasets and complex analyses.
- Galaxy is an open web-based platform for accessible reproducible and transparent computational research. While this link directs users to the Galaxy project, there are dozens of other Galaxy servers available.
- BaseSpace is Illumina's answer to Galaxy, and is a cloud-based genomics analysis tool fully integrated with Illumina technology.
- Empowering the Development of Genomics Expertise (EDGE) is a point-and-click style tool for analyzing genome assemblies and Next Generation Sequencing
- GenePattern is a workflow tool for genome research
- STRING provides protein-protein interaction network visual analysis tools
- CIPRES provides cyberinfrastructure for the determination of large phylogenetic trees
- The Gene Ontology Consortium provides curated representations of gene functions and so much more
- PROSITE is a website for identification of protein families and domains
- PDBeFold provides the ability to compare 3D protein structures
- GoMapMan is an open web-accessible resource for gene functional annotations in the plant sciences
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