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Bioinformatics: Plant Biology

This LibGuide (Library Guide) Provides Selected Bioinformatics links, definitions, tools, and resources for the CSHL Community

CSHL Plant Biology

Cold Spring Harbor Laboratory has a long tradition of Plant Biology Research, which is continued today in the laboratories of David Jackson, Zachary Lippman, Rob Martienssen, Ullas Pedmale, and Doreen Ware.  The following links may be of use to members of these laboratories.

Databases, Websites, and Resources

TAIR: The Arabidopsis Information Resource is the home for all things Arabidopsis

Gramene is a curated, open source, integrated data resource for comparative functional genomics in crops and model plant species

1 kP project is a multidisciplinary project to provide the genomes of 1000 plants.

CyVerse - Although CyVerse began as the iPlant Collaborative, a dedicated bioinformatics resource for the plant biology community, it has now expanded to include all aspects of life sciences.

KBase is a large-scale knowledgebase.  It is a bioinformatics system, software and data platform for meeting the challenges of systems biology.

PlantGDB - The Plant Genome Database is a database of resources for comparative plant genomics, including genome browsers, assemblies, annotations, tools, workflows, etc.

 

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